INCREDB ID : 166
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Harsha Gowda, Ph.D.
Faculty Scientist 
 
Institute of Bioinformatics
Discoverer Building, International Tech Park, Whitefield
Bangalore - 560 066    
Karnataka   
 
E-mail: harsha@ibioinformatics.org
Phone: +91-80-28416140
Mobile: +91-9902205653
Fax: +91-80-28416132
 
URL: http://www.ibioinformatics.org/harshagowda.html
 
Positions Held:
Position Affiliation Time Period
Faculty Scientist Institute of Bioinformatics, Bangalore, India 2008-Present
Research fellow Institute of Bioinformatics, Bangalore, India 2002-2004
 
Area of Specialization:
Genomics
Proteomics
Bioinformatics and Databases
Research Summary:
Cancer biomarkers
Proteogenomics
Human genome analysis
 
Publications:
1. Selvan, L. D., Sreenivasamurthy, S. K., Kumar, S., Yelamanchi, S. D., Madugundu, A. K., Anil, A. K., Renuse, S., Nair, B. G., Gowda, H., Mathur, P. P., Satishchandra, P., Shankar, S. K., Mahadevan, A. and Keshava, P.  Characterization of host response to Cryptococcus neoformans through quantitative proteomic analysis of cryptococcal meningitis co-infected with HIV. Molecular BioSystems. 2015.  11, 2529-2540. [PubMed]
2. Sivadasan, P., Gupta, M. K., Sathe, G. J., Balakrishnan, L., Palit, P., Gowda, H., Suresh, A., Kuriakose, M. A. and Sirdeshmukh, R.  Human salivary proteome - a resource of potential biomarkers for oral cancer. Journal of Proteomics. 2015.  127, 89-95. [PubMed]
3. Pawar, H., Chavan, S., Mahale, K., Khobragade, S., Kulkarni, A., Patil, A., Chaphekar, D., Varriar, P., Sudeep, A., Pai, K., Prasad, T. S., Gowda, H. and Patole, M. S.  A proteomic map of the unsequenced kala-azar vector Phlebotomus papatasi using cell line. Acta Tropica. 2015.  152, 80-89. [PubMed]
4. Verma, R., Balakrishnan, L., Sharma, K., Khan, A. A., Advani, J., Gowda, H., Tripathy, S. P., Suar, M., Pandey, A., Gandotra, S., Prasad, T. S. and Shankar, S.  A network map of Interleukin-10 signaling pathway. Journal of Cell Communication and Signaling. 2015.  [PubMed]
5. Sivadasan, P., Kumar, G., Sathe, G. J., Balakrishnan, L., Palit, P., Gowda, H., Suresh, A., Abraham, K. and Sirdeshmukh, R.  Data from human salivary proteome - A resource of potential biomarkers for oral cancer. Data in Brief. 2015.  4, 374-378. [PubMed]
6. Sharma, J., Balakrishnan, L., Datta, K. K., Sahasrabuddhe, N. A., Khan, A. A., Sahu, A., Singhal, A., Getnet, D., Raju, R., Chatterjee, A., Gowda, H., Keshava, P., Shankar, S. and Pandey, A.  A knowledgebase resource for interleukin-17 family mediated signaling. Journal of Cell Communication and Signaling. 2015.  9, 291-296. [PubMed]
7. Mir, S. A., Rajagopalan, P., Jain, A. P., Khan, A. A., Datta, K. K., Mohan, S. V., Lateef, S. S., Sahasrabuddhe, N., Somani, B. L., Keshava, P., Chatterjee, A., Veerendra, K., VijayaKumar, M., Kumar, R. V., Gundimeda, S., Pandey, A. and Gowda, H.  LC-MS-based serum metabolomic analysis reveals dysregulation of phosphatidylcholines in esophageal squamous cell carcinoma. Journal of Proteomics. 2015.  127, 96-102. [PubMed]
8. Subbannayya, Y., Mir, S. A., Renuse, S., Manda, S. S., Pinto, S. M., Puttamallesh, V. N., Solanki, H. S., Manju, H. C., Syed, N., Sharma, R., Christopher, R., Vijayakumar, M., Veerendra, K., Keshava, P., Ramaswamy, G., Kumar, R. V., Chatterjee, A., Pandey, A. and Gowda, H.  Identification of differentially expressed serum proteins in gastric adenocarcinoma. Journal of Proteomics. 2015.  127, 80-88. [PubMed]
9. Subbannayya, Y., Syed, N., Barbhuiya, M. A., Raja, R., Marimuthu, A., Sahasrabuddhe, N., Pinto, S. M., Manda, S. S., Renuse, S., Manju, H. C., Zameer, M. A., Sharma, J., Brait, M., Srikumar, K., Roa, J. C., Vijaya, K., Kumar, K. V., Prasad, T. S., Ramaswamy, G., Kumar, R. V., Pandey, A., Gowda, H. and Chatterjee, A.  Calcium calmodulin dependent kinase kinase 2 - a novel therapeutic target for gastric adenocarcinoma. Cancer Biology & Therapy. 2015.  16, 336-345. [PubMed]
10. Murthy, K. R., Rajagopalan, P., Pinto, S. M., Advani, J., Murthy, P. R., Goel, R., Subbannayya, Y., Balakrishnan, L., Dash, M., Anil, A. K., Manda, S. S., Nirujogi, R. S., Kelkar, D. S., Sathe, G. J., Dey, G., Chatterjee, A., Gowda, H., Chakravarti, S., Shankar, S., Sahasrabuddhe, N. A., Nair, B., Somani, B. L., Prasad, T. S. and Pandey, A.  Proteomics of human aqueous humor. Omics : A Journal of Integrative Biology. 2015.  19, 283-293. [PubMed]
11. Sharma, R., Gowda, H., Chavan, S., Advani, J., Kelkar, D., Kumar, G. S., Bhattacharjee, M., Chaerkady, R., Prasad, T. S., Pandey, A., Nagaraja, D. and Christopher, R.  Proteomic Signature of Endothelial Dysfunction Identified in the Serum of Acute Ischemic Stroke Patients by the iTRAQ-Based LC-MS Approach. Journal of Proteome Research. 2015.  14, 2466-2479. [PubMed]
12. Jamdhade, M. D., Pawar, H., Chavan, S., Sathe, G., Umasankar, P. K., Mahale, K. N., Dixit, T., Madugundu, A. K., Prasad, T. S., Gowda, H., Pandey, A. and Patole, M. S.  Comprehensive proteomics analysis of glycosomes from Leishmania donovani. Omics : A Journal of Integrative Biology. 2015.  19, 157-170. [PubMed]
13. Kim, M. S., Pinto, S. M., Getnet, D., Nirujogi, R. S., Manda, S. S., Chaerkady, R., Madugundu, A. K., Kelkar, D. S., Isserlin, R., Jain, S., Thomas, J. K., Muthusamy, B., Leal-Rojas, P., Kumar, P., Sahasrabuddhe, N. A., Balakrishnan, L., Advani, J., George, B., Renuse, S., Selvan, L. D., Patil, A. H., Nanjappa, V., Radhakrishnan, A., Prasad, S., Subbannayya, T., Raju, R., Kumar, M., Sreenivasamurthy, S. K., Marimuthu, A., Sathe, G. J., Chavan, S., Datta, K. K., Subbannayya, Y., Sahu, A., Yelamanchi, S. D., Jayaram, S., Rajagopalan, P., Sharma, J., Murthy, K. R., Syed, N., Goel, R., Khan, A. A., Ahmad, S., Dey, G., Mudgal, K., Chatterjee, A., Huang, T. C., Zhong, J., Wu, X., Shaw, P. G., Freed, D., Zahari, M. S., Mukherjee, K. K., Shankar, S., Mahadevan, A., Lam, H., Mitchell, C. J., Shankar, S. K., Satishchandra, P., Schroeder, J. T., Sirdeshmukh, R., Maitra, A., Leach, S. D., Drake, C. G., Halushka, M. K., Prasad, T. S., Hruban, R. H., Kerr, C. L., Bader, G. D., Iacobuzio-Donahue, C. A., Gowda, H. and Pandey, A.  A draft map of the human proteome. Nature. 2014.  509, 575-581. [PubMed]
14. Maras, J. S., Maiwall, R., Gowda, H. C., Das, S., Hussain, M. S., Kumar, C., Bihari, C., Rastogi, A., Kumar, M., Trehanpati, N., Sharma, S., Pandey, A. and Sarin, S. K.  Dysregulated iron homeostasis is strongly associated with multiorgan failure and early mortality in acute-on-chronic liver failure. Hepatology. 2015.  61, 1306-1320. [PubMed]
15. Sahu, A., Kumar, S., Sreenivasamurthy, S. K., Selvan, L. D., Madugundu, A. K., Yelamanchi, S. D., Puttamallesh, V. N., Dey, G., Anil, A. K., Srinivasan, A., Mukherjee, K. K., Gowda, H., Satishchandra, P., Mahadevan, A., Pandey, A., Prasad, T. S. and Shankar, S. K.  Host response profile of human brain proteome in toxoplasma encephalitis co-infected with HIV. Clinical Proteomics. 2014.  11, 39. [PubMed]
16. Syed, N., Barbhuiya, M. A., Pinto, S. M., Nirujogi, R. S., Renuse, S., Datta, K. K., Khan, A. A., Srikumar, K., Prasad, T. S., Kumar, M. V., Kumar, R. V., Chatterjee, A., Pandey, A. and Gowda, H.  Phosphotyrosine profiling identifies ephrin receptor A2 as a potential therapeutic target in esophageal squamous-cell carcinoma. Proteomics. 2015.  15, 374-382. [PubMed]
17. Khan, A. A., Sandhya, V. K., Singh, P., Parthasarathy, D., Kumar, A., Advani, J., Gattu, R., Ranjit, D. V., Vaidyanathan, R., Mathur, P. P., Prasad, T. S., Mac, G., Pandey, A., Raju, R. and Gowda, H.  Signaling Network Map of Endothelial TEK Tyrosine Kinase. Journal of Signal Transduction. 2014.  2014, 173026. [PubMed]
18. Varghese, A. M., Sharma, A., Mishra, P., Vijayalakshmi, K., Harsha, H. C., Sathyaprabha, T. N., Bharath, S. M., Nalini, A., Alladi, P. A. and Raju, T. R.  Chitotriosidase - a putative biomarker for sporadic amyotrophic lateral sclerosis. Clinical Proteomics. 2013.  10, 19. [PubMed]
19. Kelkar, D. S., Provost, E., Chaerkady, R., Muthusamy, B., Manda, S. S., Subbannayya, T., Selvan, L. D., Wang, C. H., Datta, K. K., Woo, S., Dwivedi, S. B., Renuse, S., Getnet, D., Huang, T. C., Kim, M. S., Pinto, S. M., Mitchell, C. J., Madugundu, A. K., Kumar, P., Sharma, J., Advani, J., Dey, G., Balakrishnan, L., Syed, N., Nanjappa, V., Subbannayya, Y., Goel, R., Prasad, T. S., Bafna, V., Sirdeshmukh, R., Gowda, H., Wang, C., Leach, S. D. and Pandey, A.  Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis. Molecular & Cellular Proteomics : MCP. 2014.  13, 3184-3198. [PubMed]
20. Gowda, H., Ivanisevic, J., Johnson, C. H., Kurczy, M. E., Benton, H. P., Rinehart, D., Nguyen, T., Ray, J., Kuehl, J., Arevalo, B., Westenskow, P. D., Wang, J., Arkin, A. P., Deutschbauer, A. M., Patti, G. J. and Siuzdak, G.  Interactive XCMS Online: simplifying advanced metabolomic data processing and subsequent statistical analyses. Analytical Chemistry. 2014.  86, 6931-6939. [PubMed]
21. Renuse, S., Madugundu, A. K., Kumar, P., Nair, B. G., Gowda, H., Prasad, T. S. and Pandey, A.  Proteomic analysis and genome annotation of Pichia pastoris, a recombinant protein expression host. Proteomics. 2014.  14, 2769-2779. [PubMed]
22. Syed, N., Chavan, S., Sahasrabuddhe, N. A., Renuse, S., Sathe, G., Nanjappa, V., Radhakrishnan, A., Raja, R., Pinto, S. M., Srinivasan, A., Prasad, T. S., Srikumar, K., Gowda, H., Santosh, V., Sidransky, D., Califano, J. A., Pandey, A. and Chatterjee, A.  Silencing of high-mobility group box 2 (HMGB2) modulates cisplatin and 5-fluorouracil sensitivity in head and neck squamous cell carcinoma. Proteomics. 2015.  15, 383-393. [PubMed]
23. Pawar, H., Renuse, S., Khobragade, S. N., Chavan, S., Sathe, G., Kumar, P., Mahale, K. N., Gore, K., Kulkarni, A., Dixit, T., Raju, R., Prasad, T. S., Harsha, H. C., Patole, M. S. and Pandey, A.  Neglected tropical diseases and omics science: proteogenomics analysis of the promastigote stage of Leishmania major parasite. Omics : A Journal of Integrative Biology. 2014.  18, 499-512. [PubMed]
24. Murthy, K. R., Goel, R., Subbannayya, Y., Jacob, H. K., Murthy, P. R., Manda, S. S., Patil, A. H., Sharma, R., Sahasrabuddhe, N. A., Parashar, A., Nair, B. G., Krishna, V., Prasad, T. s. K., Gowda, H. and Pandey, A.  Proteomic analysis of human vitreous humor. Clinical Proteomics. 2014.  11, 29. [PubMed]
25. Manda, S. S., Nirujogi, R. S., Pinto, S. M., Kim, M. S., Datta, K. K., Sirdeshmukh, R., Prasad, T. S., Thongboonkerd, V., Pandey, A. and Gowda, H.  Identification and characterization of proteins encoded by chromosome 12 as part of chromosome-centric human proteome project. Journal of Proteome Research. 2014.  13, 3166-3177. [PubMed]
26. Dwivedi, S. B., Muthusamy, B., Kumar, P., Kim, M. S., Nirujogi, R. S., Getnet, D., Ahiakonu, P., De, G., Nair, B., Gowda, H., Prasad, T. S., Kumar, N., Pandey, A. and Okulate, M.  Brain proteomics of Anopheles gambiae. Omics : A Journal of Integrative Biology. 2014.  18, 421-437. [PubMed]
27. Ambekar, A. S., Kelkar, D. S., Pinto, S. M., Sharma, R., Hinduja, I., Zaveri, K., Pandey, A., Prasad, T. S., Gowda, H. and Mukherjee, S.  Proteomics of follicular fluid from women with polycystic ovary syndrome suggests molecular defects in follicular development. The Journal of Clinical Endocrinology and Metabolism. 2015.  100, 744-753. [PubMed]
28. Sahasrabuddhe, N. A., Huang, T. C., Ahmad, S., Kim, M. S., Yang, Y., Ghosh, B., Leach, S. D., Gowda, H., Somani, B. L., Chaerkady, R. and Pandey, A.  Regulation of PPAR-alpha pathway by Dicer revealed through proteomic analysis. Journal of Proteomics. 2014.  108, 306-315. [PubMed]
29. Raju, R., Palapetta, S. M., Sandhya, V. K., Sahu, A., Alipoor, A., Balakrishnan, L., Advani, J., George, B., Kini, K. R., Geetha, N. P., Prakash, H. S., Prasad, T. S., Chang, Y. J., Chen, L., Pandey, A. and Gowda, H.  A Network Map of FGF-1/FGFR Signaling System. Journal of Signal Transduction. 2014.  2014, 962962. [PubMed]
30. Pinto, S. M., Manda, S. S., Kim, M. S., Taylor, K., Selvan, L. D., Balakrishnan, L., Subbannayya, T., Yan, F., Prasad, T. S., Gowda, H., Lee, C., Hancock, W. S. and Pandey, A.  Functional annotation of proteome encoded by human chromosome 22. Journal of Proteome Research. 2014.  13, 2749-2760. [PubMed]
31. Sahasrabuddhe, N. A., Barbhuiya, M. A., Bhunia, S., Subbannayya, T., Gowda, H., Advani, J., Shrivastav, B. R., Navani, S., Leal, P., Roa, J. C., Chaerkady, R., Gupta, S., Chatterjee, A., Pandey, A. and Tiwari, P. K.  Identification of prosaposin and transgelin as potential biomarkers for gallbladder cancer using quantitative proteomics. Biochemical and Biophysical Research Communications. 2014.  446, 863-869. [PubMed]
32. Nagarajha, S., Kaviyil, J. E., Nirujogi, R. S., Muthusamy, B., Puttamallesh, V. N., Subbannayya, T., Syed, N., Radhakrishnan, A., Kelkar, D. S., Ahmad, S., Pinto, S. M., Kumar, P., Madugundu, A. K., Nair, B., Chatterjee, A., Pandey, A., Ravikumar, R., Gowda, H. and Prasad, T. S.  Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry. Clinical Proteomics. 2014.  11, 5. [PubMed]
33. Balakrishnan, L., Nirujogi, R. S., Ahmad, S., Bhattacharjee, M., Manda, S. S., Renuse, S., Kelkar, D. S., Subbannayya, Y., Raju, R., Goel, R., Thomas, J. K., Kaur, N., Dhillon, M., Tankala, S. G., Jois, R., Vasdev, V., Ramachandra, Y., Sahasrabuddhe, N. A., Prasad, T. s. K., Mohan, S., Gowda, H., Shankar, S. and Pandey, A.  Proteomic analysis of human osteoarthritis synovial fluid. Clinical Proteomics. 2014.  11, 6. [PubMed]
34. Selvan, L. D., Renuse, S., Kaviyil, J. E., Sharma, J., Pinto, S. M., Yelamanchi, S. D., Puttamallesh, V. N., Ravikumar, R., Pandey, A., Prasad, T. S. and Harsha, H. C.  Phosphoproteome of Cryptococcus neoformans. Journal of Proteomics. 2014.  97, 287-295. [PubMed]
35. Nirujogi, R. S., Pawar, H., Renuse, S., Kumar, P., Chavan, S., Sathe, G., Sharma, J., Khobragade, S., Pande, J., Modak, B., Prasad, T. S., Harsha, H. C., Patole, M. S. and Pandey, A.  Moving from unsequenced to sequenced genome: reanalysis of the proteome of Leishmania donovani. Journal of Proteomics. 2014.  97, 48-61. [PubMed]
36. Balakrishnan, L., Bhattacharjee, M., Ahmad, S., Nirujogi, R. S., Renuse, S., Subbannayya, Y., Marimuthu, A., Srikanth, S. M., Raju, R., Dhillon, M., Kaur, N., Jois, R., Vasudev, V., Ramachandra, Y., Sahasrabuddhe, N. A., Prasad, T. s. K., Mohan, S., Gowda, H., Shankar, S. and Pandey, A.  Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients. Clinical Proteomics. 2014.  11, 1. [PubMed]
37. Nanjappa, V., Thomas, J. K., Marimuthu, A., Muthusamy, B., Radhakrishnan, A., Sharma, R., Ahmad, K., Balakrishnan, L., Sahasrabuddhe, N. A., Kumar, S., Jhaveri, B. N., Sheth, K. V., Kumar, K., Shaw, P. G., Srikanth, S. M., Mathur, P. P., Shankar, S., Nagaraja, D., Christopher, R., Mathivanan, S., Raju, R., Sirdeshmukh, R., Chatterjee, A., Simpson, R. J., Harsha, H. C., Pandey, A. and Prasad, T. S.  Plasma Proteome Database as a resource for proteomics research: 2014 update. Nucleic Acids Research. 2014.  42, D959-65. [PubMed]
38. Ramadasan-Nair, R., Gayathri, N., Mishra, S., Sunitha, B., Mythri, R. B., Nalini, A., Subbannayya, Y., Harsha, H. C., Kolthur-Seetharam, U. and Srinivas, B.  Mitochondrial alterations and oxidative stress in an acute transient mouse model of muscle degeneration: implications for muscular dystrophy and related muscle pathologies. The Journal of Biological Chemistry. 2014.  289, 485-509. [PubMed]
39. Puttamallesh, V. N., Sreenivasamurthy, S. K., Singh, P. K., Harsha, H. C., Ganjiwale, A., Broor, S., Pandey, A., Narayana, J. and Prasad, T. S.  Proteomic profiling of serum samples from chikungunya-infected patients provides insights into host response. Clinical Proteomics. 2013.  10, 14. [PubMed]
40. Bhattacharjee, M., Sharma, R., Goel, R., Balakrishnan, L., Renuse, S., Advani, J., Gupta, S. T., Verma, R., Pinto, S. M., Sekhar, N. R., Nair, B., Prasad, T. S., Harsha, H. C., Jois, R., Shankar, S. and Pandey, A.  A multilectin affinity approach for comparative glycoprotein profiling of rheumatoid arthritis and spondyloarthropathy. Clinical Proteomics. 2013.  10, 11. [PubMed]
41. Goel, R., Murthy, K. R., Srikanth, S. M., Pinto, S. M., Bhattacharjee, M., Kelkar, D. S., Madugundu, A. K., Dey, G., Mohan, S. S., Krishna, V., Prasad, T. s. K., Chakravarti, S., Harsha, H. and Pandey, A.  Characterizing the normal proteome of human ciliary body. Clinical Proteomics. 2013.  10, 9. [PubMed]
42. Prasad, T. S., Verma, R., Kumar, S., Nirujogi, R. S., Sathe, G. J., Madugundu, A. K., Sharma, J., Puttamallesh, V. N., Ganjiwale, A., Myneedu, V. P., Chatterjee, A., Pandey, A., Harsha, H. and Narayana, J.  Proteomic analysis of purified protein derivative of Mycobacterium tuberculosis. Clinical Proteomics. 2013.  10, 8. [PubMed]
43. Sreenivasamurthy, S. K., Dey, G., Ramu, M., Kumar, M., Gupta, M. K., Mohanty, A. K., Harsha, H. C., Sharma, P., Kumar, N., Pandey, A., Kumar, A. and Prasad, T. S.  A compendium of molecules involved in vector-pathogen interactions pertaining to malaria. Malaria Journal. 2013.  12, 216. [PubMed]
44. Polisetty, R. V., Gautam, P., Gupta, M. K., Sharma, R., Uppin, M. S., Challa, S., Ankathi, P., Purohit, A. K., Renu, D., Harsha, H. C., Pandey, A. and Sirdeshmukh, R.  Heterogeneous nuclear ribonucleoproteins and their interactors are a major class of deregulated proteins in anaplastic astrocytoma: a grade III malignant glioma. Journal of Proteome Research. 2013.  12, 3128-3138. [PubMed]
45. Ambekar, A. S., Nirujogi, R. S., Srikanth, S. M., Chavan, S., Kelkar, D. S., Hinduja, I., Zaveri, K., Prasad, T. S., Harsha, H. C., Pandey, A. and Mukherjee, S.  Proteomic analysis of human follicular fluid: a new perspective towards understanding folliculogenesis. Journal of Proteomics. 2013.  87, 68-77. [PubMed]
46. Marimuthu, A., Chavan, S., Sathe, G., Sahasrabuddhe, N. A., Srikanth, S. M., Renuse, S., Ahmad, S., Radhakrishnan, A., Barbhuiya, M. A., Kumar, R. V., Harsha, H. C., Sidransky, D., Califano, J., Pandey, A. and Chatterjee, A.  Identification of head and neck squamous cell carcinoma biomarker candidates through proteomic analysis of cancer cell secretome. Biochimica et Biophysica Acta. 2013.  1834, 2308-2316. [PubMed]
47. Balakrishnan, L., Soman, S., Patil, Y. B., Advani, J., Thomas, J. K., Desai, D. V., Kulkarni-Kale, U., Harsha, H. C., Prasad, T. S., Raju, R., Pandey, A., Dimitriadis, E. and Chatterjee, A.  IL-11/IL11RA receptor mediated signaling: a web accessible knowledgebase. Cell Communication & Adhesion. 2013.  20, 81-86. [PubMed]
48. Marimuthu, A., Subbannayya, Y., Sahasrabuddhe, N. A., Balakrishnan, L., Syed, N., Sekhar, N. R., Katte, T. V., Pinto, S. M., Srikanth, S. M., Kumar, P., Pawar, H., Kashyap, M. K., Maharudraiah, J., Ashktorab, H., Smoot, D. T., Ramaswamy, G., Kumar, R. V., Cheng, Y., Meltzer, S. J., Roa, J. C., Chaerkady, R., Prasad, T. S., Harsha, H. C., Chatterjee, A. and Pandey, A.  SILAC-based quantitative proteomic analysis of gastric cancer secretome. Proteomics. Clinical Applications. 2013.  7, 355-366. [PubMed]
49. Harsha, H. C., Pinto, S. M. and Pandey, A.  Proteomic strategies to characterize signaling pathways. Methods in Molecular Biology. 2013.  1007, 359-377. [PubMed]
50. Venugopal, A. K., Ghantasala, S. S., Selvan, L. D., Mahadevan, A., Renuse, S., Kumar, P., Pawar, H., Sahasrabhuddhe, N. A., Suja, M. S., Ramachandra, Y. L., Prasad, T. S., Madhusudhana, S. N., Hc, H., Chaerkady, R., Satishchandra, P., Pandey, A. and Shankar, S. K.  Quantitative proteomics for identifying biomarkers for Rabies. Clinical Proteomics. 2013.  10, 3. [PubMed]
51. Kashyap, M. K., Pawar, H. A., Keerthikumar, S., Sharma, J., Goel, R., Mahmood, R., Kumar, M. V., Kumar, K. V., Pandey, A., Kumar, R. V., Prasad, T. S. and Harsha, H. C.  Evaluation of protein expression pattern of stanniocalcin 2, insulin-like growth factor-binding protein 7, inhibin beta A and four and a half LIM domains 1 in esophageal squamous cell carcinoma. Cancer Biomarkers : Section A of Disease Markers. 2012-2013.  12, 1-9. [PubMed]
52. Kumar, G. S., Venugopal, A. K., Mahadevan, A., Renuse, S., Harsha, H. C., Sahasrabuddhe, N. A., Pawar, H., Sharma, R., Kumar, P., Rajagopalan, S., Waddell, K., Ramachandra, Y. L., Satishchandra, P., Chaerkady, R., Prasad, T. S., Shankar, K. and Pandey, A.  Quantitative proteomics for identifying biomarkers for tuberculous meningitis. Clinical Proteomics. 2012.  9, 12. [PubMed]
53. Soman, S., Raju, R., Sandhya, V. K., Advani, J., Khan, A. A., Harsha, H. C., Prasad, T. S., Sudhakaran, P. R., Pandey, A. and Adishesha, P. K.  A multicellular signal transduction network of AGE/RAGE signaling. Journal of Cell Communication and Signaling. 2013.  7, 19-23. [PubMed]
54. Kalra, H., Simpson, R. J., Ji, H., Aikawa, E., Altevogt, P., Askenase, P., Bond, V. C., Borras, F. E., Breakefield, X., Budnik, V., Buzas, E., Camussi, G., Clayton, A., Cocucci, E., Falcon-Perez, J. M., Gabrielsson, S., Gho, Y. S., Gupta, D., Harsha, H. C., Hendrix, A., Hill, A. F., Inal, J. M., Jenster, G., Kramer-Albers, E. M., Lim, S. K., Llorente, A., Lotvall, J., Marcilla, A., Mincheva-Nilsson, L., Nazarenko, I., Nieuwland, R., Nolte-'t, H., Pandey, A., Patel, T., Piper, M. G., Pluchino, S., Prasad, T. S., Rajendran, L., Raposo, G., Record, M., Reid, G. E., Sanchez-Madrid, F., Schiffelers, R. M., Siljander, P., Stensballe, A., Stoorvogel, W., Taylor, D., Thery, C., Valadi, H., van, B., Vazquez, J., Vidal, M., Wauben, M. H., Yanez-Mo, M., Zoeller, M. and Mathivanan, S.  Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation. PLoS Biology. 2012.  10, e1001450. [PubMed]
55. Kim, M. S., Kuppireddy, S. V., Sakamuri, S., Singal, M., Getnet, D., Harsha, H. C., Goel, R., Balakrishnan, L., Jacob, H. K., Kashyap, M. K., Tankala, S. G., Maitra, A., Iacobuzio-Donahue, C. A., Jaffee, E., Goggins, M. G., Velculescu, V. E., Hruban, R. H. and Pandey, A.  Rapid characterization of candidate biomarkers for pancreatic cancer using cell microarrays (CMAs). Journal of Proteome Research. 2012.  11, 5556-5563. [PubMed]
56. Polisetty, R. V., Gautam, P., Sharma, R., Harsha, H. C., Nair, S. C., Gupta, M. K., Uppin, M. S., Challa, S., Puligopu, A. K., Ankathi, P., Purohit, A. K., Chandak, G. R., Pandey, A. and Sirdeshmukh, R.  LC-MS/MS analysis of differentially expressed glioblastoma membrane proteome reveals altered calcium signaling and other protein groups of regulatory functions. Molecular & Cellular Proteomics : MCP. 2012.  11, M111.013565. [PubMed]
57. Nagaraj, S. H., Harsha, H. C., Reverter, A., Colgrave, M. L., Sharma, R., Andronicos, N., Hunt, P., Menzies, M., Lees, M. S., Sekhar, N. R., Pandey, A. and Ingham, A.  Proteomic analysis of the abomasal mucosal response following infection by the nematode, Haemonchus contortus, in genetically resistant and susceptible sheep. Journal of Proteomics. 2012.  75, 2141-2152. [PubMed]
58. Prasad, T. S., Harsha, H. C., Keerthikumar, S., Sekhar, N. R., Selvan, L. D., Kumar, P., Pinto, S. M., Muthusamy, B., Subbannayya, Y., Renuse, S., Chaerkady, R., Mathur, P. P., Ravikumar, R. and Pandey, A.  Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry. Journal of Proteome Research. 2012.  11, 247-260. [PubMed]
59. Goel, R., Harsha, H. C., Pandey, A. and Prasad, T. S.  Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis. Molecular BioSystems. 2012.  8, 453-463. [PubMed]
60. Pawar, H., Sahasrabuddhe, N. A., Renuse, S., Keerthikumar, S., Sharma, J., Kumar, G. S., Venugopal, A., Sekhar, N. R., Kelkar, D. S., Nemade, H., Khobragade, S. N., Muthusamy, B., Kandasamy, K., Harsha, H. C., Chaerkady, R., Patole, M. S. and Pandey, A.  A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani. Proteomics. 2012.  12, 832-844. [PubMed]
61. Pawar, H., Maharudraiah, J., Kashyap, M. K., Sharma, J., Srikanth, S. M., Choudhary, R., Chavan, S., Sathe, G., Manju, H. C., Kumar, K. V., Vijayakumar, M., Sirdeshmukh, R., Harsha, H. C., Prasad, T. S., Pandey, A. and Kumar, R. V.  Downregulation of cornulin in esophageal squamous cell carcinoma. Acta Histochemica. 2013.  115, 89-99. [PubMed]
62. Bhattacharjee, M., Raju, R., Radhakrishnan, A., Nanjappa, V., Muthusamy, B., Singh, K., Kuppusamy, D., Lingala, B. T., Pan, A., Mathur, P. P., Harsha, H. C., Prasad, T. S., Atkins, G. J., Pandey, A. and Chatterjee, A.  A Bioinformatics Resource for TWEAK-Fn14 Signaling Pathway. Journal of Signal Transduction. 2012.  2012, 376470. [PubMed]
63. Renuse, S., Harsha, H. C., Kumar, P., Acharya, P. K., Sharma, J., Goel, R., Kumar, G. S., Raju, R., Prasad, T. S., Slotta, T. and Pandey, A.  Proteomic analysis of an unsequenced plant--Mangifera indica. Journal of Proteomics. 2012.  75, 5793-5796. [PubMed]
64. Radhakrishnan, A., Raju, R., Tuladhar, N., Subbannayya, T., Thomas, J. K., Goel, R., Telikicherla, D., Palapetta, S. M., Rahiman, B. A., Venkatesh, D. D., Urmila, K. K., Harsha, H. C., Mathur, P. P., Prasad, T. S., Pandey, A., Shemanko, C. and Chatterjee, A.  A pathway map of prolactin signaling. Journal of Cell Communication and Signaling. 2012.  6, 169-173. [PubMed]
65. Goel, R., Harsha, H. C., Pandey, A. and Prasad, T. S.  Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis. Molecular BioSystems. 2012.  8, 453-463. [PubMed]
66. Kelkar, D. S., Kumar, D., Kumar, P., Balakrishnan, L., Muthusamy, B., Yadav, A. K., Shrivastava, P., Marimuthu, A., Anand, S., Sundaram, H., Kingsbury, R., Harsha, H. C., Nair, B., Prasad, T. S., Chauhan, D. S., Katoch, K., Katoch, V. M., Kumar, P., Chaerkady, R., Ramachandran, S., Dash, D. and Pandey, A.  Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry. Molecular & Cellular Proteomics : MCP. 2011.  10, M111.011627. [PubMed]
67. Pawar, H., Kashyap, M. K., Sahasrabuddhe, N. A., Renuse, S., Harsha, H. C., Kumar, P., Sharma, J., Kandasamy, K., Marimuthu, A., Nair, B., Rajagopalan, S., Maharudraiah, J., Premalatha, C. S., Kumar, K. V., Vijayakumar, M., Chaerkady, R., Prasad, T. S., Kumar, R. V., Kumar, R. V. and Pandey, A.  Quantitative tissue proteomics of esophageal squamous cell carcinoma for novel biomarker discovery. Cancer Biology & Therapy. 2011.  12, 510-522. [PubMed]
68. Goel, R., Raju, R., Maharudraiah, J., Sameer, K., Ghosh, K., Kumar, A., Lakshmi, T. P., Sharma, J., Sharma, R., Balakrishnan, L., Pan, A., Kandasamy, K., Christopher, R., Krishna, V., Mohan, S. S., Harsha, H. C., Mathur, P. P., Pandey, A. and Keshava, P.  A Signaling Network of Thyroid-Stimulating Hormone. Journal of Proteomics & Bioinformatics. 2011.  4. [PubMed]
69. Raju, R., Nanjappa, V., Balakrishnan, L., Radhakrishnan, A., Thomas, J. K., Sharma, J., Tian, M., Palapetta, S. M., Subbannayya, T., Sekhar, N. R., Muthusamy, B., Goel, R., Subbannayya, Y., Telikicherla, D., Bhattacharjee, M., Pinto, S., Syed, N., Srinivas, S. M., Sathe, G. J., Ahmad, S., Chavan, S. N., Kumar, G. S. S., Marimuthu, A., Prasad, T. S. K., Harsha, H. C., Rahiman, B. A., Ohara, O., Bader, G. D., Mohan, S. S., Schiemann, W. P. and Pandey, A. (2011). Netslim: High-confidence curated signaling maps. Database. In press.
70. Pawar, H., Kashyap, M. K., Sahasrabuddhe, N. A., Renuse, S., Harsha, H. C., Kumar, P., Sharma, J., Kandasamy, K., Marimuthu, A., Nair, B., Rajagopalan, S., Maharudraiah, J., Premalatha, C. S., Veerendra Kumar, K. V., Vijayakumar, M., Chaerkady, R., Prasad, T. S. K., Kumar, R. V. and Pandey, A. Quantitative Tissue Proteomics of Esophageal Squamous Cell Carcinoma for Novel Biomarker Discovery. Cancer Biology and Therapy. 2011. In Press.
71. Harsha, H. C. and Pandey, A.  Phosphoproteomics in cancer. Molecular oncology. 2010. 4, 482-495. [PubMed]
72. Kashyap, M. K., Harsha, H. C., Renuse, S., Pawar, H., Sahasrabuddhe, N. A., Kim, M. S., Marimuthu, A., Keerthikumar, S., Muthusamy, B., Kandasamy, K., Subbannayya, Y., Prasad, T. S., Mahmood, R., Chaerkady, R., Meltzer, S. J., Kumar, R. V., Rustgi, A. K. and Pandey, A.  SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome. Cancer biology & therapy. 2010. 10. [PubMed]
73. Prasad, T. S. K., Keerthikumar, S., Chaerkady, R., Kandasamy, K., Renuse, S., Marimuthu, A., Venugopal, A. K., Thomas, J. K., Jacob, H. K. C., Goel, R., Pawar, H., Sahasrabuddhe, N. A., Krishna, V., Nair, B. G., Gucek, M., Cole, R. N., Ravikumar, R., Harsha, H. C. and Pandey, A. Comparative proteomic analysis of Candida albicans and Candida glabrata.  Clinical Proteomics. 2010. 6, 163-173.
74. Harsha, H. C., Kandasamy, K., Ranganathan, P., Rani, S., Ramabadran, S., Gollapudi, S., Balakrishnan, L., Dwivedi, S. B., Telikicherla, D., Selvan, L. D., Goel, R., Mathivanan, S., Marimuthu, A., Kashyap, M., Vizza, R. F., Mayer, R. J., Decaprio, J. A., Srivastava, S., Hanash, S. M., Hruban, R. H. and Pandey, A.  A compendium of potential biomarkers of pancreatic cancer. PLoS medicine. 2009. 6, e1000046-0. [PubMed]
75. Ranganathan, P., Harsha, H. C. and Pandey, A.  Molecular alterations in exocrine neoplasms of the pancreas. Archives of pathology & laboratory medicine. 2009. 133, 405-412. [PubMed]
76. Kristiansen, T. Z., Harsha, H. C., Gronborg, M., Maitra, A. and Pandey, A.  Differential membrane proteomics using 18O-labeling to identify biomarkers for cholangiocarcinoma. Journal of proteome research. 2008. 7, 4670-4677. [PubMed]
77. Harsha, H. C., Jimeno, A., Molina, H., Mihalas, A. B., Goggins, M. G., Hruban, R. H., Schulick, R. D., Kamath, U., Maitra, A., Hidalgo, M. and Pandey, A.  Activated epidermal growth factor receptor as a novel target in pancreatic cancer therapy. Journal of proteome research. 2008. 7, 4651-4658. [PubMed]
.78. Guha, U., Chaerkady, R., Marimuthu, A., Patterson, A. S., Kashyap, M. K., Harsha, H. C., Sato, M., Bader, J. S., Lash, A. E., Minna, J. D., Pandey, A. and Varmus, H. E.  Comparisons of tyrosine phosphorylated proteins in cells expressing lung cancer-specific alleles of EGFR and KRAS. Proceedings of the National Academy of Sciences of the United States of America. 2008. 105, 14112-14117. [PubMed]
79. Chaerkady, R., Harsha, H. C., Nalli, A., Gucek, M., Vivekanandan, P., Akhtar, J., Cole, R. N., Simmers, J., Schulick, R. D., Singh, S., Torbenson, M., Pandey, A. and Thuluvath, P. J.  A quantitative proteomic approach for identification of potential biomarkers in hepatocellular carcinoma. Journal of proteome research. 2008. 7, 4289-4298. [PubMed]
80. Harsha, H. C., Molina, H. and Pandey, A.  Quantitative proteomics using stable isotope labeling with amino acids in cell culture. Nature protocols. 2008. 3, 505-516. [PubMed]
81. Mathivanan, S., Ahmed, M., Ahn, N. G., Alexandre, H., Amanchy, R., Andrews, P. C., Bader, J. S., Balgley, B. M., Bantscheff, M., Bennett, K. L., Bjorling, E., Blagoev, B., Bose, R., Brahmachari, S. K., Burlingame, A. S., Bustelo, X. R., Cagney, G., Cantin, G. T., Cardasis, H. L., Celis, J. E., Chaerkady, R., Chu, F., Cole, P. A., Costello, C. E., Cotter, R. J., Crockett, D., DeLany, J. P., De, M., DeSouza, L. V., Deutsch, E. W., Dransfield, E., Drewes, G., Droit, A., Dunn, M. J., Elenitoba-Johnson, K., Ewing, R. M., Van, E. y. k., Faca, V., Falkner, J., Fang, X., Fenselau, C., Figeys, D., Gagne, P., Gelfi, C., Gevaert, K., Gimble, J. M., Gnad, F., Goel, R., Gromov, P., Hanash, S. M., Hancock, W. S., Harsha, H. C., Hart, G., Hays, F., He, F., Hebbar, P., Helsens, K., Hermeking, H., Hide, W., Hjerno, K., Hochstrasser, D. F., Hofmann, O., Horn, D. M., Hruban, R. H., Ibarrola, N., James, P., Jensen, O. N., Jensen, P. H., Jung, P., Kandasamy, K., Kheterpal, I., Kikuno, R. F., Korf, U., Korner, R., Kuster, B., Kwon, M. S., Lee, H. J., Lee, Y. J., Lefevre, M., Lehvaslaiho, M., Lescuyer, P., Levander, F., Lim, M. S., Lobke, C., Loo, J. A., Mann, M., Martens, L., Martinez-Heredia, J., McComb, M., McRedmond, J., Mehrle, A., Menon, R., Miller, C. A., Mischak, H., Mohan, S. S., Mohmood, R., Molina, H., Moran, M. F., Morgan, J. D., Moritz, R., Morzel, M., Muddiman, D. C., Nalli, A., Navarro, J. D., Neubert, T. A., Ohara, O., Oliva, R., Omenn, G. S., Oyama, M., Paik, Y. K., Pennington, K., Pepperkok, R., Periaswamy, B., Petricoin, E. F., Poirier, G. G., Prasad, T. S., Purvine, S. O., Rahiman, B. A., Ramachandran, P., Ramachandra, Y. L., Rice, R. H., Rick, J., Ronnholm, R. H., Salonen, J., Sanchez, J. C., Sayd, T., Seshi, B., Shankari, K., Sheng, S. J., Shetty, V., Shivakumar, K., Simpson, R. J., Sirdeshmukh, R., Siu, K. W., Smith, J. C., Smith, R. D., States, D. J., Sugano, S., Sullivan, M., Superti-Furga, G., Takatalo, M., Thongboonkerd, V., Trinidad, J. C., Uhlen, M., Vandekerckhove, J., Vasilescu, J., Veenstra, T. D., Vidal-Taboada, J. M., Vihinen, M., Wait, R., Wang, X., Wiemann, S., Wu, B., Xu, T., Yates, J. R., Zhong, J., Zhou, M., Zhu, Y., Zurbig, P. and Pandey, A.  Human Proteinpedia enables sharing of human protein data. Nature biotechnology. 2008. 26, 164-167. [PubMed]
82. Mishra, G. R., Suresh, M., Kumaran, K., Kannabiran, N., Suresh, S., Bala, P., Shivakumar, K., Anuradha, N., Reddy, R., Raghavan, T. M., Menon, S., Hanumanthu, G., Gupta, M., Upendran, S., Gupta, S., Mahesh, M., Jacob, B., Mathew, P., Chatterjee, P., Arun, K. S., Sharma, S., Chandrika, K. N., Deshpande, N., Palvankar, K., Raghavnath, R., Krishnakanth, R., Karathia, H., Rekha, B., Nayak, R., Vishnupriya, G., Kumar, H. G., Nagini, M., Kumar, G. S., Jose, R., Deepthi, P., Mohan, S. S., Gandhi, T. K., Harsha, H. C., Deshpande, K. S., Sarker, M., Prasad, T. S. and Pandey, A.  Human protein reference database--2006 update. Nucleic acids research. 2006. 34, D411-3. [PubMed]
83. Raghothama, C., Harsha, H. C., Prasad, C. K. and Pandey, A.  Bioinformatics and proteomics approaches for aging research. Biogerontology. 2005. 6, 227-232. [PubMed]
84. Muthusamy, B., Hanumanthu, G., Suresh, S., Rekha, B., Srinivas, D., Karthick, L., Vrushabendra, B. M., Sharma, S., Mishra, G., Chatterjee, P., Mangala, K. S., Shivashankar, H. N., Chandrika, K. N., Deshpande, N., Suresh, M., Kannabiran, N., Niranjan, V., Nalli, A., Prasad, T. S., Arun, K. S., Reddy, R., Chandran, S., Jadhav, T., Julie, D., Mahesh, M., John, S. L., Palvankar, K., Sudhir, D., Bala, P., Rashmi, N. S., Vishnupriya, G., Dhar, K., Reshma, S., Chaerkady, R., Gandhi, T. K., Harsha, H. C., Mohan, S. S., Deshpande, K. S., Sarker, M. and Pandey, A.  Plasma Proteome Database as a resource for proteomics research. Proteomics. 2005. 5, 3531-3536. [PubMed]
85. Harsha, H. C., Suresh, S., Amanchy, R., Deshpande, N., Shanker, K., Yatish, A. J., Muthusamy, B., Vrushabendra, B. M., Rashmi, B. P., Chandrika, K. N., Padma, N., Sharma, S., Badano, J. L., Ramya, M. A., Shivashankar, H. N., Peri, S., Choudhury, D. R., Kavitha, M. P., Saravana, R., Niranjan, V., Gandhi, T. K., Ghosh, N., Chandran, S., Menezes, M., Joy, M., Mohan, S. S., Katsanis, N., Deshpande, K. S., Raghothama, C., Prasad, C. K. and Pandey, A.  A manually curated functional annotation of the human X chromosome. Nature genetics. 2005. 37, 331-332. [PubMed]
86. Peri, S., Navarro, J. D., Kristiansen, T. Z., Amanchy, R., Surendranath, V., Muthusamy, B., Gandhi, T. K., Chandrika, K. N., Deshpande, N., Suresh, S., Rashmi, B. P., Shanker, K., Padma, N., Niranjan, V., Harsha, H. C., Talreja, N., Vrushabendra, B. M., Ramya, M. A., Yatish, A. J., Joy, M., Shivashankar, H. N., Kavitha, M. P., Menezes, M., Choudhury, D. R., Ghosh, N., Saravana, R., Chandran, S., Mohan, S., Jonnalagadda, C. K., Prasad, C. K., Kumar-Sinha, C., Deshpande, K. S. and Pandey, A.  Human protein reference database as a discovery resource for proteomics. Nucleic acids research. 2004. 32, D497-4. [PubMed]
87. Peri, S., Navarro, J. D., Amanchy, R., Kristiansen, T. Z., Jonnalagadda, C. K., Surendranath, V., Niranjan, V., Muthusamy, B., Gandhi, T. K., Gronborg, M., Ibarrola, N., Deshpande, N., Shanker, K., Shivashankar, H. N., Rashmi, B. P., Ramya, M. A., Zhao, Z., Chandrika, K. N., Padma, N., Harsha, H. C., Yatish, A. J., Kavitha, M. P., Menezes, M., Choudhury, D. R., Suresh, S., Ghosh, N., Saravana, R., Chandran, S., Krishna, S., Joy, M., Anand, S. K., Madavan, V., Joseph, A., Wong, G. W., Schiemann, W. P., Constantinescu, S. N., Huang, L., Khosravi-Far, R., Steen, H., Tewari, M., Ghaffari, S., Blobe, G. C., Dang, C. V., Garcia, J. G., Pevsner, J., Jensen, O. N., Roepstorff, P., Deshpande, K. S., Chinnaiyan, A. M., Hamosh, A., Chakravarti, A. and Pandey, A.  Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome research. 2003. 13, 2363-2371. [PubMed]
88. Deshpande, K. S., Harsha, H. C. and Pandey, A. Microarrays and Mass Spectrometry - The Future of Proteomics. Current Genomics. 2003. 4, 605-613.
 
My CV:   Download
 
Education 
::
Ph.D. in Proteomics, Institute of Bioinformatics, Bangalore/Johns Hopkins University, Baltimore, USA
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M.Sc. in Biotechnology, University of Mysore
Honors and Awards
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Wellcome Trust-DBT Early Career Fellowship
Member
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Indian Association for Cancer Research
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Reviewer- Proteomics, International Journal of Cancer, Biochimica et Biophysica Acta- Proteins and Proteomics
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Reviewer for grant proposals to Cancer Research, UK
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Editorial Board Member - Journal of Proteomics
  Last modified on : Dec 14, 2015
India Cancer Research Database has been developed by the Institute of Bioinformatics with funding from the Department of Biotechnology, Government of India.